ENCODE
Search the ENCODE Portal. ENCODE. SCREEN. Functional genomics. Functional characterization. Encyclopedia of elements. Rush Alzheimer’s. EN-TEx. Deeply profiled cell …
Project Overview – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements …
ENCODE Encyclopedia, Version 4: Genomic annotations – ENCODE
The ENCODE Encyclopedia organizes the most salient analysis products into annotations and provides tools to search and visualize them. The Encyclopedia has two levels of annotations: …
ATAC-seq Data Standards and Processing Pipeline - ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment. Pipeline …
Getting Started - ENCODE
Welcome to the ENCODE Portal! The ENCODE Portal, developed and maintained by the Data Coordination Center (ENCODE DCC), is the canonical source for all experimental metadata …
SCREEN: Search Candidate Regulatory Elements by ENCODE
SCREEN is a web interface for searching and visualizing the Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE data. The Registry contains 1,063,878 human …
Search - ENCODE
Homo sapiens activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL …
Matrix – ENCODE
Filter the . experiments included in the matrix:. Showing 17252 results. List Report
ENCODE Encyclopedia
The ENCODE Project aims to map all functional elements of the human and mouse genomes. Progress toward this goal has involved over ten thousand epigenomic experiments utilizing a …
eCLIP Data Standards – ENCODE
ENCODE 3 Standards. Experimental guidelines for eCLIP experiments can be found here. Experiments should have two or more biological replicates, isogenic or anisogenic. Antibodies …